Artículo

Leguto, A.J.; Smith, M.A.; Morgada, M.N.; Zitare, U.A.; Murgida, D.H.; Lancaster, K.M.; Vila, A.J. "Dramatic Electronic Perturbations of Cu A Centers via Subtle Geometric Changes" (2019) Journal of the American Chemical Society. 141(3):1373-1381
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Abstract:

Cu A is a binuclear copper site acting as electron entry port in terminal heme-copper oxidases. In the oxidized form, Cu A is a mixed valence pair whose electronic structure can be described using a potential energy surface with two minima, σ u ∗ and π u , that are variably populated at room temperature. We report that mutations in the first and second coordination spheres of the binuclear metallocofactor can be combined in an additive manner to tune the energy gap and, thus, the relative populations of the two lowest-lying states. A series of designed mutants span σ u ∗/π u energy gaps ranging from 900 to 13 cm -1 . The smallest gap corresponds to a variant with an effectively degenerate ground state. All engineered sites preserve the mixed-valence character of this metal center and the electron transfer functionality. An increase of the Cu-Cu distance less than 0.06 Å modifies the σ u /π u energy gap by almost 2 orders of magnitude, with longer distances eliciting a larger population of the π u state. This scenario offers a stark contrast to synthetic systems, as model compounds require a lengthening of 0.5 Å in the Cu-Cu distance to stabilize the π u state. These findings show that the tight control of the protein environment allows drastic perturbations in the electronic structure of Cu A sites with minor geometric changes. © 2018 American Chemical Society.

Registro:

Documento: Artículo
Título:Dramatic Electronic Perturbations of Cu A Centers via Subtle Geometric Changes
Autor:Leguto, A.J.; Smith, M.A.; Morgada, M.N.; Zitare, U.A.; Murgida, D.H.; Lancaster, K.M.; Vila, A.J.
Filiación:Instituto de Biología Molecular y Celular de Rosario (IBR), Departamento de Química Biológica, Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, CONICET, Rosario, 2000, Argentina
Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, United States
Instituto de Química Física de Los Materiales Medio Ambiente y Energía, Departamento de Química Inorgánica, Analítica y Química Física, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, CONICET, Buenos Aires, 1428, Argentina
Palabras clave:Binary alloys; Copper; Electronic structure; Energy gap; Ground state; Potential energy; Quantum chemistry; Coordination sphere; Electron transfer; Electronic perturbations; Engineered site; Geometric changes; Heme-copper oxidase; Orders of magnitude; Synthetic systems; Copper alloys; copper ion; Article; chemical binding; chemical interaction; chemical modification; chemical parameters; chemical structure; electron transport; energy; geometry; mutation; structure analysis
Año:2019
Volumen:141
Número:3
Página de inicio:1373
Página de fin:1381
DOI: http://dx.doi.org/10.1021/jacs.8b12335
Título revista:Journal of the American Chemical Society
Título revista abreviado:J. Am. Chem. Soc.
ISSN:00027863
CODEN:JACSA
Registro:https://bibliotecadigital.exactas.uba.ar/collection/paper/document/paper_00027863_v141_n3_p1373_Leguto

Referencias:

  • Ramirez, B.E., Malmström, B.G., Winkler, J.R., Gray, H.B., The currents of life: The terminal electron-transfer complex of respiration (1995) Proc. Natl. Acad. Sci. U. S. A., 92, pp. 11949-11951
  • Kroneck, P.M.H., Walking the seven lines: Binuclear copper A in cytochrome c oxidase and nitrous oxide reductase (2018) JBIC, J. Biol. Inorg. Chem., 23, pp. 27-39
  • Solomon, E.I., Xie, X., Dey, A., Mixed valent sites in biological electron transfer (2008) Chem. Soc. Rev., 37, pp. 623-638
  • Randall, D.W., Gamelin, D.R., Lacroix, L.B., Solomon, E.I., Electronic structure contributions to electron transfer in blue Cu and Cu(A) (2000) JBIC, J. Biol. Inorg. Chem., 5, pp. 16-29
  • Kroneck, P.M., Antholine, W.A., Riester, J., Zumft, W.G., The nature of the cupric site in nitrous oxide reductase and of Cu A in cytochrome c oxidase (1989) FEBS Lett., 248, pp. 212-213
  • Liu, J., Chakraborty, S., Hosseinzadeh, P., Yu, Y., Tian, S., Petrik, I., Bhagi, A., Lu, Y., Metalloproteins Containing Cytochrome, Iron-Sulfur, or Copper Redox Centers (2014) Chem. Rev., 114, pp. 4366-4469
  • Gorelsky, S.I., Xie, X., Chen, Y., Fee, J.A., Solomon, E.I., The two-state issue in the mixed-valence binuclear Cu A center in cytochrome c oxidase and N 2 O reductase (2006) J. Am. Chem. Soc., 128, pp. 16452-16453
  • Olsson, M.H., Ryde, U., Geometry, reduction potential, and reorganization energy of the binuclear Cu(A) site, studied by density functional theory (2001) J. Am. Chem. Soc., 123, pp. 7866-7876
  • Xie, X., Gorelsky, S.I., Sarangi, R., Garner, D.K., Hwang, H.J., Hodgson, K.O., Hedman, B., Solomon, E.I., Perturbations to the geometric and electronic structure of the Cu A site: Factors that influence delocalization and their contributions to electron transfer (2008) J. Am. Chem. Soc., 130, pp. 5194-5205
  • Debeer George, S., Metz, M., Szilagyi, R.K., Wang, H., Cramer, S.P., Lu, Y., Tolman, W.B., Solomon, E.I., A Quantitative Description of the Ground-State Wave Function of Cu A by X-ray Absorption Spectroscopy: Comparison to Plastocyanin and Relevance to Electron Transfer (2001) J. Am. Chem. Soc., 123, pp. 5757-5767
  • Bertini, I., Bren, K.L., Clemente, A., Fee, J.A., Gray, H.B., Luchinat, C., Malmström, B.G., Slutter, C.E., The Cu A Center of a soluble domain from Thermus Cytochrome ba 3 . An NMR investigation of the paramagnetic protein (1996) J. Am. Chem. Soc., 118, pp. 11658-11659
  • Abriata, L.A., Ledesma, G.N., Pierattelli, R., Vila, A.J., Electronic structure of the ground and excited states of the Cu(A) site by NMR spectroscopy (2009) J. Am. Chem. Soc., 131, pp. 1939-1946
  • Abriata, L.A., Alvarez-Paggi, D., Ledesma, G.N., Blackburn, N.J., Vila, A.J., Murgida, D.H., Alternative ground states enable pathway switching in biological electron transfer (2012) Proc. Natl. Acad. Sci. U. S. A., 109, pp. 17348-17353
  • Tsai, M.-L., Hadt, R.G., Marshall, N.M., Wilson, T.D., Lu, Y., Solomon, E.I., Axial interactions in the mixed-valent Cu A active site and role of the axial methionine in electron transfer (2013) Proc. Natl. Acad. Sci. U. S. A., 110, pp. 14658-14663
  • Morgada, M.N., Abriata, L.A., Zitare, U., Alvarez-Paggi, D., Murgida, D.H., Vila, A.J., Control of the electronic ground state on an electron-transfer copper site by second-sphere perturbations (2014) Angew. Chem., Int. Ed., 53, pp. 6188-6192
  • Zitare, U., Alvarez-Paggi, D., Morgada, M.N., Abriata, L.A., Vila, A.J., Murgida, D.H., Reversible Switching of Redox-Active Molecular Orbitals and Electron Transfer Pathways in Cu(A) Sites of Cytochrome c Oxidase (2015) Angew. Chem., Int. Ed., 54, pp. 9555-9559
  • Williams, P.A., Blackburn, N.J., Sanders, D., Bellamy, H., Stura, E.A., Fee, J.A., McRee, D.E., The Cu A domain of Thermus thermophilus ba 3 -type cytochrome c oxidase at 1.6 Å resolution (1999) Nat. Struct. Biol., 6, pp. 509-516
  • Hay, M., Richards, J.H., Lu, Y., Construction and characterization of an azurin analog for the purple copper site in cytochrome c oxidase (1996) Proc. Natl. Acad. Sci. U. S. A., 93, pp. 461-464
  • Blackburn, N.J., Barr, M.E., Woodruff, W.H., Van Der Oost, J., De Vries, S., Metal-metal bonding in biology: EXAFS evidence for a 2.5 Å copper-copper bond in the Cu A center of cytochrome oxidase (1994) Biochemistry, 33, pp. 10401-10407
  • Houser, R.P., Young, V.G., Jr., Tolman, W.B., A Thiolate-Bridged, Fully Delocalized Mixed-Valence Dicopper(I,II) Complex That Models the Cu A Biological Electron-Transfer Site (1996) J. Am. Chem. Soc., 118, pp. 2101-2102
  • Gennari, M., Pécaut, J., Debeer, S., Neese, F., Collomb, M.-N., Duboc, C., A Fully Delocalized Mixed-Valence Bis-μ(Thiolato) Dicopper Complex: A Structural and Functional Model of the Biological Cu A Center (2011) Angew. Chem., Int. Ed., 50, pp. 5662-5666
  • Hwang, H.J., Nagraj, N., Lu, Y., Spectroscopic characterizations of bridging cysteine ligand variants of an engineered Cu 2 (Scys) 2 Cu A azurin (2006) Inorg. Chem., 45, pp. 102-107
  • Zickermann, V., Wittershagen, A., Kolbesen, B.O., Ludwig, B., Transformation of the Cu A Redox Site in Cytochrome c Oxidase into a Mononuclear Copper Center (1997) Biochemistry, 36, pp. 3232-3236
  • Marshall, N.M., Garner, D.K., Wilson, T.D., Gao, Y.G., Robinson, H., Nilges, M.J., Lu, Y., Rationally tuning the reduction potential of a single cupredoxin beyond the natural range (2009) Nature, 462, pp. 113-116
  • Hosseinzadeh, P., Marshall, N.M., Chacon, K.N., Yu, Y., Nilges, M.J., New, S.Y., Tashkov, S.A., Lu, Y., Design of a single protein that spans the entire 2-V range of physiological redox potentials (2016) Proc. Natl. Acad. Sci. U. S. A., 113, pp. 262-267
  • Gamelin, D.R., Randall, D.W., Hay, M.T., Houser, R.P., Mulder, T.C., Canters, G.W., De Vries, S., Solomon, E.I., Spectroscopy of a Mixed-Valence Cu A -Type Centers: Ligand Field Control of Ground-State Properties Related to Electron Transfer (1998) J. Am. Chem. Soc., 120, pp. 5246-5263
  • Alvarez-Paggi, D., Zitare, U.A., Szuster, J., Morgada, M.N., Leguto, A.J., Vila, A.J., Murgida, D.H., Tuning of Enthalpic/Entropic Parameters of a Protein Redox Center through Manipulation of the Electronic Partition Function (2017) J. Am. Chem. Soc., 139, pp. 9803-9806
  • Shokhirev, N.V., Walker, F.A., Analysis of the Temperature Dependence of the 1 H Contact Shifts in Low-Spin Fe(III) Model Hemes and Heme Proteins: Explanation of 'Curie' and 'Anti-Curie' Behavior within the Same Molecule (1995) J. Phys. Chem., 99, pp. 17795-17804
  • Salgado, J., Kroes, S.J., Berg, A., Moratal, J.M., Canters, G.W., The dynamic properties of the M121H azurin metal site as studied by NMR of the paramagnetic Cu(II) and Co(II) metalloderivatives (1998) J. Biol. Chem., 273, pp. 177-185
  • Banci, L., Bertini, I., Luchinat, C., Pierattelli, R., Shokhirev, N.V., Walker, F.A., Analysis of the Temperature Dependence of the 1 H and 13 C Isotropic Shifts of Horse Heart Ferricytochrome c: Explanation of Curie and Anti-Curie Temperature Dependence and Nonlinear Pseudocontact Shifts in a Common Two-Level Framework (1998) J. Am. Chem. Soc., 120, pp. 8279-8472
  • Slutter, C.E., Sanders, D., Wittung, P., Malmström, B.G., Aasa, R., Richards, J.H., Gray, H.B., Fee, J.A., Water-Soluble, Recombinant Cu A -Domain of the Cytochrome ba 3 Subunit II from Thermus thermophilus (1996) Biochemistry, 35, pp. 3387-3395
  • Fernandez, C.O., Cricco, J.A., Slutter, C.E., Richards, J.H., Gray, H.B., Vila, A.J., Axial ligand modulation of the electronic structures of binuclear copper sites: Analysis of paramagnetic 1 H NMR spectra of Met160Gln Cu(A) (2001) J. Am. Chem. Soc., 123, pp. 11678-11685
  • George, G.N., Pickering, I.J., (1995) EXAFSPAK: A Suite of Computer Programs for Analysis of X-ray Absorption Spectra, , SSRL: Stanford
  • Mustre De Leon, J., Rehr, J.J., Zabinsky, S.I., Albers, R.C., Ab initio curved-wave x-ray-absorption fine structure (1991) Phys. Rev. B: Condens. Matter Mater. Phys., 44, pp. 4146-4156
  • Rehr, J.J., Mustre De Leon, J., Zabinsky, S.I., Albers, R.C., Theoretical x-ray absorption fine structure standards (1991) J. Am. Chem. Soc., 113, pp. 5135-5140
  • Laviron, E., General expression of the linear potential sweep voltammogram in the case of diffusionless electrochemical systems (1979) J. Electroanal. Chem. Interfacial Electrochem., 101, pp. 19-28
  • Stoll, S., Schweiger, A., Easy Spin, a Comprehensive Software Package for Spectral Simulation and Analysis in EPR (2006) J. Magn. Reson., 178, pp. 42-55

Citas:

---------- APA ----------
Leguto, A.J., Smith, M.A., Morgada, M.N., Zitare, U.A., Murgida, D.H., Lancaster, K.M. & Vila, A.J. (2019) . Dramatic Electronic Perturbations of Cu A Centers via Subtle Geometric Changes. Journal of the American Chemical Society, 141(3), 1373-1381.
http://dx.doi.org/10.1021/jacs.8b12335
---------- CHICAGO ----------
Leguto, A.J., Smith, M.A., Morgada, M.N., Zitare, U.A., Murgida, D.H., Lancaster, K.M., et al. "Dramatic Electronic Perturbations of Cu A Centers via Subtle Geometric Changes" . Journal of the American Chemical Society 141, no. 3 (2019) : 1373-1381.
http://dx.doi.org/10.1021/jacs.8b12335
---------- MLA ----------
Leguto, A.J., Smith, M.A., Morgada, M.N., Zitare, U.A., Murgida, D.H., Lancaster, K.M., et al. "Dramatic Electronic Perturbations of Cu A Centers via Subtle Geometric Changes" . Journal of the American Chemical Society, vol. 141, no. 3, 2019, pp. 1373-1381.
http://dx.doi.org/10.1021/jacs.8b12335
---------- VANCOUVER ----------
Leguto, A.J., Smith, M.A., Morgada, M.N., Zitare, U.A., Murgida, D.H., Lancaster, K.M., et al. Dramatic Electronic Perturbations of Cu A Centers via Subtle Geometric Changes. J. Am. Chem. Soc. 2019;141(3):1373-1381.
http://dx.doi.org/10.1021/jacs.8b12335